A mesoscale connectome of the mouse brain

NDB (Diagonal band nucleus) MBA:596 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 177605425, an anterograde tracer injected into NDB of a Chat-IRES-Cre-neo mouse, the tracer Cre-dependent (62% of the injection in NDB) labelled axons in COAa (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 177605425

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167026321, an anterograde tracer injected into BST of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (25% of the injection in BST) labelled axons in MEA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 167026321

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MEA (Medial amygdalar nucleus) MBA:403 projects to LSv (Lateral septal nucleus, ventral part) MBA:266 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549361039, an anterograde tracer injected into MEA of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (61% of the injection in MEA) labelled axons in LSv (projection density 0.047).

Allen Mouse Brain Connectivity Atlas, experiment 549361039

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TT (Taenia tecta) MBA:589 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 133286030, an anterograde tracer injected into TT of a wild-type mouse (43% of the injection in TT) labelled axons in BLA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 133286030

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MD (Mediodorsal nucleus of thalamus) MBA:362 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 268399145, an anterograde tracer injected into MD of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (85% of the injection in MD) labelled axons in BLA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 268399145

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EPd (Endopiriform nucleus, dorsal part) MBA:952 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158321996, an anterograde tracer injected into EPd of a wild-type mouse (37% of the injection in EPd) labelled axons in BLA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 158321996

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MEA (Medial amygdalar nucleus) MBA:403 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182041643, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in SPA (projection density 0.144).

Allen Mouse Brain Connectivity Atlas, experiment 182041643

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CEA (Central amygdalar nucleus) MBA:536 projects to PAG (Periaqueductal gray) MBA:795 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in PAG (projection density 0.055).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

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CEA (Central amygdalar nucleus) MBA:536 projects to PH (Posterior hypothalamic nucleus) MBA:946 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PH (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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PIR (Piriform area) MBA:961 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184259031, an anterograde tracer injected into PIR of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (98% of the injection in PIR) labelled axons in AAA (projection density 0.066).

Allen Mouse Brain Connectivity Atlas, experiment 184259031

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PIL (Posterior intralaminar thalamic nucleus) MBA:560581563 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in PIL (projection density 0.060).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in NDB (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in MPO (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to FS (Fundus of striatum) MBA:998 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in FS (projection density 0.081).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to GPe (Globus pallidus, external segment) MBA:1022 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in GPe (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MDRNd (Medullary reticular nucleus, dorsal part) MBA:1098 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in MDRNd (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to RR (Midbrain reticular nucleus, retrorubral area) MBA:246 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 120281646, an anterograde tracer injected into CEA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (98% of the injection in CEA) labelled axons in RR (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 120281646

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PA (Posterior amygdalar nucleus) MBA:780 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in CEA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

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VMH (Ventromedial hypothalamic nucleus) MBA:693 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175106769, an anterograde tracer injected into VMH of a wild-type mouse (45% of the injection in VMH) labelled axons in AAA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 175106769

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SPFp (Subparafascicular nucleus, parvicellular part) MBA:422 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in SPFp (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165972951, an anterograde tracer injected into BMA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (27% of the injection in BMA) labelled axons in MA (projection density 0.087).

Allen Mouse Brain Connectivity Atlas, experiment 165972951

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in MPO (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to PAA (Piriform-amygdalar area) MBA:788 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in PAA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

ECT (Ectorhinal area) MBA:895 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180435652, an anterograde tracer injected into ECT of a wild-type mouse (38% of the injection in ECT) labelled axons in IA (projection density 0.112).

Allen Mouse Brain Connectivity Atlas, experiment 180435652

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ECT (Ectorhinal area) MBA:895 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180435652, an anterograde tracer injected into ECT of a wild-type mouse (38% of the injection in ECT) labelled axons in BMA (projection density 0.113).

Allen Mouse Brain Connectivity Atlas, experiment 180435652

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to LSr (Lateral septal nucleus, rostral (rostroventral) part) MBA:258 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in LSr (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to HATA (Hippocampo-amygdalar transition area) MBA:589508447 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in HATA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PIR (Piriform area) MBA:961 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in PIR (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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CA1 (Field CA1) MBA:382 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182226839, an anterograde tracer injected into CA1 of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (44% of the injection in CA1) labelled axons in CEA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 182226839

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CEA (Central amygdalar nucleus) MBA:536 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146795148, an anterograde tracer injected into CEA of a wild-type mouse (64% of the injection in CEA) labelled axons in IA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 146795148

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 142654100, an anterograde tracer injected into ENTl of a wild-type mouse (91% of the injection in ENTl) labelled axons in BMA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 142654100

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SGN (Suprageniculate nucleus) MBA:325 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113165340, an anterograde tracer injected into SGN of a Etv1-CreERT2 mouse, the tracer Cre-dependent (16% of the injection in SGN) labelled axons in CEA (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 113165340

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to HATA (Hippocampo-amygdalar transition area) MBA:589508447 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in HATA (projection density 0.046).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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CEA (Central amygdalar nucleus) MBA:536 projects to VPMpc (Ventral posteromedial nucleus of the thalamus, parvicellular part) MBA:741 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in VPMpc (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

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AAA (Anterior amygdalar area) MBA:23 projects to Xi (Xiphoid thalamic nucleus) MBA:560581559 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in Xi (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to POST (Postsubiculum) MBA:1037 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113144533, an anterograde tracer injected into BLA of a wild-type mouse (78% of the injection in BLA) labelled axons in POST (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 113144533

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to NDB (Diagonal band nucleus) MBA:596 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in NDB (projection density 0.058).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to PeF (Perifornical nucleus) MBA:576073704 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in PeF (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

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SUB (Subiculum) MBA:502 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 288322091, an anterograde tracer injected into SUB of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (43% of the injection in SUB) labelled axons in BLA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 288322091

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LHA (Lateral hypothalamic area) MBA:194 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860092, an anterograde tracer injected into LHA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (36% of the injection in LHA) labelled axons in CEA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 170860092

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MOs (Secondary motor area) MBA:993 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180916954, an anterograde tracer injected into MOs of a wild-type mouse (96% of the injection in MOs) labelled axons in BLA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 180916954

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CLA (Claustrum) MBA:583 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 485903475, an anterograde tracer injected into CLA of a Gnb4-IRES2-Cre mouse, the tracer Cre-dependent (40% of the injection in CLA) labelled axons in COAa (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 485903475

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CEA (Central amygdalar nucleus) MBA:536 projects to PT (Parataenial nucleus) MBA:15 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PT (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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BST (Bed nuclei of the stria terminalis) MBA:351 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204832917, an anterograde tracer injected into BST of a Crh-IRES-Cre_ZJH mouse, the tracer Cre-dependent (45% of the injection in BST) labelled axons in MEA (projection density 0.082).

Allen Mouse Brain Connectivity Atlas, experiment 204832917

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MPO (Medial preoptic area) MBA:523 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 298049545, an anterograde tracer injected into MPO of a Lypd6-Cre_KL156 mouse, the tracer Cre-dependent (44% of the injection in MPO) labelled axons in CEA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 298049545

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MEA (Medial amygdalar nucleus) MBA:403 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in BA (projection density 0.298).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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MS (Medial septal nucleus) MBA:564 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 100141597, an anterograde tracer injected into MS of a wild-type mouse (58% of the injection in MS) labelled axons in MEA (projection density 0.035).

Allen Mouse Brain Connectivity Atlas, experiment 100141597

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CEA (Central amygdalar nucleus) MBA:536 projects to SSp-ll (Primary somatosensory area, lower limb) MBA:337 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in SSp-ll (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PB (Parabrachial nucleus) MBA:867 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in PB (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

PT (Parataenial nucleus) MBA:15 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266839077, an anterograde tracer injected into PT of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (52% of the injection in PT) labelled axons in BMA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 266839077

Made by an adapter reading a database (allen-connectivity@1.3.0).