A mesoscale connectome of the mouse brain

CA1 (Field CA1) MBA:382 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286610923, an anterograde tracer injected into CA1 of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (85% of the injection in CA1) labelled axons in BLA (projection density 0.070).

Allen Mouse Brain Connectivity Atlas, experiment 286610923

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to ASO (Accessory supraoptic group) MBA:332 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in ASO (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

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CEA (Central amygdalar nucleus) MBA:536 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 554022330, an anterograde tracer injected into CEA of a Tacr1-T2A-Cre mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in VMPO (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 554022330

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MEA (Medial amygdalar nucleus) MBA:403 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in PR (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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MEA (Medial amygdalar nucleus) MBA:403 projects to AOB (Accessory olfactory bulb) MBA:151 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in AOB (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

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PIR (Piriform area) MBA:961 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157654069, an anterograde tracer injected into PIR of a wild-type mouse (55% of the injection in PIR) labelled axons in TR (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 157654069

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ENTl (Entorhinal area, lateral part) MBA:918 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286837316, an anterograde tracer injected into ENTl of a A930038C07Rik-Tg1-Cre mouse, the tracer Cre-dependent (51% of the injection in ENTl) labelled axons in LA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 286837316

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PIR (Piriform area) MBA:961 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184259031, an anterograde tracer injected into PIR of a Syt17-Cre_NO14 mouse, the tracer Cre-dependent (98% of the injection in PIR) labelled axons in PA (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 184259031

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MEA (Medial amygdalar nucleus) MBA:403 projects to PH (Posterior hypothalamic nucleus) MBA:946 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in PH (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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MEA (Medial amygdalar nucleus) MBA:403 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267547788, an anterograde tracer injected into MEA of a Fezf1-T2A-dCre mouse, the tracer Cre-dependent (31% of the injection in MEA) labelled axons in MRN (projection density 0.037).

Allen Mouse Brain Connectivity Atlas, experiment 267547788

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in AAA (projection density 0.298).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

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TU (Tuberal nucleus) MBA:614 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 264248605, an anterograde tracer injected into TU of a Esr1-2A-Cre mouse, the tracer Cre-dependent (36% of the injection in TU) labelled axons in LA (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 264248605

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ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 585026021, an anterograde tracer injected into ENTm of a wild-type mouse (87% of the injection in ENTm) labelled axons in PA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 585026021

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to LHA (Lateral hypothalamic area) MBA:194 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267813932, an anterograde tracer injected into BMA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (38% of the injection in BMA) labelled axons in LHA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 267813932

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DP (Dorsal peduncular area) MBA:814 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112597496, an anterograde tracer injected into DP of a wild-type mouse (68% of the injection in DP) labelled axons in BA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 112597496

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MEA (Medial amygdalar nucleus) MBA:403 projects to RSPagl (Retrosplenial area, lateral agranular part) MBA:894 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 170860801, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (75% of the injection in MEA) labelled axons in RSPagl (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 170860801

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CEA (Central amygdalar nucleus) MBA:536 projects to RT (Reticular nucleus of the thalamus) MBA:262 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 265648940, an anterograde tracer injected into CEA of a Slc18a2-Cre_OZ14 mouse, the tracer Cre-dependent (54% of the injection in CEA) labelled axons in RT (projection density 0.050).

Allen Mouse Brain Connectivity Atlas, experiment 265648940

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182226133, an anterograde tracer injected into ENTl of a Otof-Cre mouse, the tracer Cre-dependent (99% of the injection in ENTl) labelled axons in AAA (projection density 0.031).

Allen Mouse Brain Connectivity Atlas, experiment 182226133

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PB (Parabrachial nucleus) MBA:867 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PB (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

COAp (Cortical amygdalar area, posterior part) MBA:647 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267150949, an anterograde tracer injected into COAp of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (53% of the injection in COAp) labelled axons in EPd (projection density 0.049).

Allen Mouse Brain Connectivity Atlas, experiment 267150949

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in TU (projection density 0.081).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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LHA (Lateral hypothalamic area) MBA:194 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158373181, an anterograde tracer injected into LHA of a wild-type mouse (35% of the injection in LHA) labelled axons in COAa (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 158373181

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in MPN (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to TEa (Temporal association areas) MBA:541 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in TEa (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 523705737, an anterograde tracer injected into AHN of a Rasgrf2-T2A-dCre mouse, the tracer Cre-dependent (16% of the injection in AHN) labelled axons in CEA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 523705737

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CEA (Central amygdalar nucleus) MBA:536 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in ECT (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to ADP (Anterodorsal preoptic nucleus) MBA:72 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in ADP (projection density 0.053).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in TR (projection density 0.145).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PP (Peripeduncular nucleus) MBA:1044 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PP (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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ENTl (Entorhinal area, lateral part) MBA:918 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 167212932, an anterograde tracer injected into ENTl of a Otof-Cre mouse, the tracer Cre-dependent (100% of the injection in ENTl) labelled axons in BLA (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 167212932

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PAG (Periaqueductal gray) MBA:795 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in PAG (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

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BLA (Basolateral amygdalar nucleus) MBA:295 projects to SNc (Substantia nigra, compact part) MBA:374 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 277710753, an anterograde tracer injected into BLA of a wild-type mouse (49% of the injection in BLA) labelled axons in SNc (projection density 0.020).

Allen Mouse Brain Connectivity Atlas, experiment 277710753

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CEA (Central amygdalar nucleus) MBA:536 projects to AMB (Nucleus ambiguus) MBA:135 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in AMB (projection density 0.023).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to SPFp (Subparafascicular nucleus, parvicellular part) MBA:422 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278179088, an anterograde tracer injected into CEA of a Crh-IRES-Cre_BL mouse, the tracer Cre-dependent (51% of the injection in CEA) labelled axons in SPFp (projection density 0.044).

Allen Mouse Brain Connectivity Atlas, experiment 278179088

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to LSv (Lateral septal nucleus, ventral part) MBA:266 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125802444, an anterograde tracer injected into COAp of a wild-type mouse (45% of the injection in COAp) labelled axons in LSv (projection density 0.178).

Allen Mouse Brain Connectivity Atlas, experiment 125802444

Made by an adapter reading a database (allen-connectivity@1.3.0).

AHN (Anterior hypothalamic nucleus) MBA:88 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182842391, an anterograde tracer injected into AHN of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (36% of the injection in AHN) labelled axons in MEA (projection density 0.019).

Allen Mouse Brain Connectivity Atlas, experiment 182842391

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NDB (Diagonal band nucleus) MBA:596 projects to COAp (Cortical amygdalar area, posterior part) MBA:647 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 158257355, an anterograde tracer injected into NDB of a wild-type mouse (18% of the injection in NDB) labelled axons in COAp (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 158257355

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to AOB (Accessory olfactory bulb) MBA:151 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in AOB (projection density 0.091).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

Made by an adapter reading a database (allen-connectivity@1.3.0).

MM (Medial mammillary nucleus) MBA:491 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126710740, an anterograde tracer injected into MM of a wild-type mouse (17% of the injection in MM) labelled axons in AAA (projection density 0.042).

Allen Mouse Brain Connectivity Atlas, experiment 126710740

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AAA (Anterior amygdalar area) MBA:23 projects to ORBm (Orbital area, medial part) MBA:731 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in ORBm (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

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MEA (Medial amygdalar nucleus) MBA:403 projects to MPO (Medial preoptic area) MBA:523 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 293469501, an anterograde tracer injected into MEA of a Htr2a-Cre_KM207 mouse, the tracer Cre-dependent (77% of the injection in MEA) labelled axons in MPO (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 293469501

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in DMH (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

MPN (Medial preoptic nucleus) MBA:515 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127909584, an anterograde tracer injected into MPN of a wild-type mouse (16% of the injection in MPN) labelled axons in MEA (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 127909584

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DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 266174751, an anterograde tracer injected into DMH of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (11% of the injection in DMH) labelled axons in AAA (projection density 0.034).

Allen Mouse Brain Connectivity Atlas, experiment 266174751

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MA (Magnocellular nucleus) MBA:298 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in MA (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

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RE (Nucleus of reuniens) MBA:181 projects to PA (Posterior amygdalar nucleus) MBA:780 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175374982, an anterograde tracer injected into RE of a wild-type mouse (64% of the injection in RE) labelled axons in PA (projection density 0.014).

Allen Mouse Brain Connectivity Atlas, experiment 175374982

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to MPN (Medial preoptic nucleus) MBA:515 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127761449, an anterograde tracer injected into CEA of a wild-type mouse (35% of the injection in CEA) labelled axons in MPN (projection density 0.045).

Allen Mouse Brain Connectivity Atlas, experiment 127761449

Made by an adapter reading a database (allen-connectivity@1.3.0).

PA (Posterior amygdalar nucleus) MBA:780 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in IA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to LA (Lateral amygdalar nucleus) MBA:131 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175019536, an anterograde tracer injected into RE of a wild-type mouse (17% of the injection in RE) labelled axons in LA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 175019536

Made by an adapter reading a database (allen-connectivity@1.3.0).

LHA (Lateral hypothalamic area) MBA:194 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 278508779, an anterograde tracer injected into LHA of a Ppp1r17-Cre_NL146 mouse, the tracer Cre-dependent (42% of the injection in LHA) labelled axons in MEA (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 278508779

Made by an adapter reading a database (allen-connectivity@1.3.0).