A mesoscale connectome of the mouse brain

DR (Dorsal nucleus raphe) MBA:872 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 114155190, an anterograde tracer injected into DR of a Slc6a4-CreERT2_EZ13 mouse, the tracer Cre-dependent (63% of the injection in DR) labelled axons in TR (projection density 0.117).

Allen Mouse Brain Connectivity Atlas, experiment 114155190

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MEA (Medial amygdalar nucleus) MBA:403 projects to AOB (Accessory olfactory bulb) MBA:151 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 549361039, an anterograde tracer injected into MEA of a Oxtr-T2A-Cre mouse, the tracer Cre-dependent (61% of the injection in MEA) labelled axons in AOB (projection density 0.029).

Allen Mouse Brain Connectivity Atlas, experiment 549361039

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NDB (Diagonal band nucleus) MBA:596 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286319739, an anterograde tracer injected into NDB of a Ntrk1-IRES-Cre mouse, the tracer Cre-dependent (72% of the injection in NDB) labelled axons in BMA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 286319739

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to MRN (Midbrain reticular nucleus) MBA:128 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 168363874, an anterograde tracer injected into MEA of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (73% of the injection in MEA) labelled axons in MRN (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 168363874

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MEA (Medial amygdalar nucleus) MBA:403 projects to PVa (Periventricular hypothalamic nucleus, anterior part) MBA:30 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in PVa (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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AON (Anterior olfactory nucleus) MBA:159 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 267103498, an anterograde tracer injected into AON of a Slc17a7-IRES2-Cre mouse, the tracer Cre-dependent (63% of the injection in AON) labelled axons in BA (projection density 0.028).

Allen Mouse Brain Connectivity Atlas, experiment 267103498

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PVa (Periventricular hypothalamic nucleus, anterior part) MBA:30 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in PVa (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

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ACB (Nucleus accumbens) MBA:56 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146470726, an anterograde tracer injected into ACB of a wild-type mouse (19% of the injection in ACB) labelled axons in IA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 146470726

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TR (Postpiriform transition area) MBA:566 projects to EPd (Endopiriform nucleus, dorsal part) MBA:952 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126653015, an anterograde tracer injected into TR of a wild-type mouse (99% of the injection in TR) labelled axons in EPd (projection density 0.078).

Allen Mouse Brain Connectivity Atlas, experiment 126653015

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MEA (Medial amygdalar nucleus) MBA:403 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175072921, an anterograde tracer injected into MEA of a wild-type mouse (27% of the injection in MEA) labelled axons in SPA (projection density 0.095).

Allen Mouse Brain Connectivity Atlas, experiment 175072921

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MD (Mediodorsal nucleus of thalamus) MBA:362 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175739791, an anterograde tracer injected into MD of a Grm2-Cre_MR90 mouse, the tracer Cre-dependent (39% of the injection in MD) labelled axons in BMA (projection density 0.067).

Allen Mouse Brain Connectivity Atlas, experiment 175739791

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to SUM (Supramammillary nucleus) MBA:525 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in SUM (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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VISC (Visceral area) MBA:677 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180436360, an anterograde tracer injected into VISC of a wild-type mouse (30% of the injection in VISC) labelled axons in IA (projection density 0.127).

Allen Mouse Brain Connectivity Atlas, experiment 180436360

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PMv (Ventral premammillary nucleus) MBA:1004 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 294316542, an anterograde tracer injected into PMv of a Tac1-IRES2-Cre mouse, the tracer Cre-dependent (26% of the injection in PMv) labelled axons in MEA (projection density 0.057).

Allen Mouse Brain Connectivity Atlas, experiment 294316542

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127255962, an anterograde tracer injected into PVT of a wild-type mouse (31% of the injection in PVT) labelled axons in CEA (projection density 0.081).

Allen Mouse Brain Connectivity Atlas, experiment 127255962

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ACB (Nucleus accumbens) MBA:56 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 508775240, an anterograde tracer injected into BMA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (61% of the injection in BMA) labelled axons in ACB (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 508775240

Made by an adapter reading a database (allen-connectivity@1.3.0).

PIR (Piriform area) MBA:961 projects to TR (Postpiriform transition area) MBA:566 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112307046, an anterograde tracer injected into PIR of a wild-type mouse (76% of the injection in PIR) labelled axons in TR (projection density 0.038).

Allen Mouse Brain Connectivity Atlas, experiment 112307046

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SI (Substantia innominata) MBA:342 projects to COAa (Cortical amygdalar area, anterior part) MBA:639 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 159650350, an anterograde tracer injected into SI of a wild-type mouse (38% of the injection in SI) labelled axons in COAa (projection density 0.070).

Allen Mouse Brain Connectivity Atlas, experiment 159650350

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PR (Perireunensis nucleus) MBA:1077 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286774064, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (57% of the injection in CEA) labelled axons in PR (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 286774064

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in RCH (projection density 0.138).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

VTA (Ventral tegmental area) MBA:749 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 127867804, an anterograde tracer injected into VTA of a Erbb4-T2A-CreERT2 mouse, the tracer Cre-dependent (22% of the injection in VTA) labelled axons in MEA (projection density 0.018).

Allen Mouse Brain Connectivity Atlas, experiment 127867804

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CEA (Central amygdalar nucleus) MBA:536 projects to LSv (Lateral septal nucleus, ventral part) MBA:266 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 181890477, an anterograde tracer injected into CEA of a Etv1-CreERT2 mouse, the tracer Cre-dependent (42% of the injection in CEA) labelled axons in LSv (projection density 0.013).

Allen Mouse Brain Connectivity Atlas, experiment 181890477

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to RCH (Retrochiasmatic area) MBA:173 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 157550122, an anterograde tracer injected into MEA of a wild-type mouse (89% of the injection in MEA) labelled axons in RCH (projection density 0.043).

Allen Mouse Brain Connectivity Atlas, experiment 157550122

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146985623, an anterograde tracer injected into MEA of a wild-type mouse (94% of the injection in MEA) labelled axons in BA (projection density 0.073).

Allen Mouse Brain Connectivity Atlas, experiment 146985623

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MEA (Medial amygdalar nucleus) MBA:403 projects to VMH (Ventromedial hypothalamic nucleus) MBA:693 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in VMH (projection density 0.168).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to MEA (Medial amygdalar nucleus) MBA:403 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 126116848, an anterograde tracer injected into ENTl of a wild-type mouse (100% of the injection in ENTl) labelled axons in MEA (projection density 0.033).

Allen Mouse Brain Connectivity Atlas, experiment 126116848

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ILA (Infralimbic area) MBA:44 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 286313491, an anterograde tracer injected into ILA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (52% of the injection in ILA) labelled axons in BA (projection density 0.017).

Allen Mouse Brain Connectivity Atlas, experiment 286313491

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CA1 (Field CA1) MBA:382 projects to BMA (Basomedial amygdalar nucleus) MBA:319 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182226839, an anterograde tracer injected into CA1 of a Vipr2-Cre_KE2 mouse, the tracer Cre-dependent (44% of the injection in CA1) labelled axons in BMA (projection density 0.068).

Allen Mouse Brain Connectivity Atlas, experiment 182226839

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to PVa (Periventricular hypothalamic nucleus, anterior part) MBA:30 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 165034344, an anterograde tracer injected into MEA of a Sim1-Cre_KJ18 mouse, the tracer Cre-dependent (63% of the injection in MEA) labelled axons in PVa (projection density 0.026).

Allen Mouse Brain Connectivity Atlas, experiment 165034344

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to DMH (Dorsomedial nucleus of the hypothalamus) MBA:830 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in DMH (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

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MEA (Medial amygdalar nucleus) MBA:403 projects to AVPV (Anteroventral periventricular nucleus) MBA:272 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125361005, an anterograde tracer injected into MEA of a wild-type mouse (92% of the injection in MEA) labelled axons in AVPV (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 125361005

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BMA (Basomedial amygdalar nucleus) MBA:319 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in PST (projection density 0.010).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to ECT (Ectorhinal area) MBA:895 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 125832322, an anterograde tracer injected into BMA of a wild-type mouse (49% of the injection in BMA) labelled axons in ECT (projection density 0.059).

Allen Mouse Brain Connectivity Atlas, experiment 125832322

Made by an adapter reading a database (allen-connectivity@1.3.0).

PA (Posterior amygdalar nucleus) MBA:780 projects to PMv (Ventral premammillary nucleus) MBA:1004 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304721447, an anterograde tracer injected into PA of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (69% of the injection in PA) labelled axons in PMv (projection density 0.041).

Allen Mouse Brain Connectivity Atlas, experiment 304721447

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to VMPO (Ventromedial preoptic nucleus) MBA:576073699 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 146012934, an anterograde tracer injected into BMA of a wild-type mouse (41% of the injection in BMA) labelled axons in VMPO (projection density 0.011).

Allen Mouse Brain Connectivity Atlas, experiment 146012934

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TU (Tuberal nucleus) MBA:614 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 182294687, an anterograde tracer injected into COAp of a Rbp4-Cre_KL100 mouse, the tracer Cre-dependent (47% of the injection in COAp) labelled axons in TU (projection density 0.063).

Allen Mouse Brain Connectivity Atlas, experiment 182294687

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTm (Entorhinal area, medial part, dorsal zone) MBA:926 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 585051446, an anterograde tracer injected into ENTm of a wild-type mouse (92% of the injection in ENTm) labelled axons in CEA (projection density 0.012).

Allen Mouse Brain Connectivity Atlas, experiment 585051446

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PVT (Paraventricular nucleus of the thalamus) MBA:149 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 184158996, an anterograde tracer injected into PVT of a Calb2-IRES-Cre mouse, the tracer Cre-dependent (42% of the injection in PVT) labelled axons in AAA (projection density 0.036).

Allen Mouse Brain Connectivity Atlas, experiment 184158996

Made by an adapter reading a database (allen-connectivity@1.3.0).

AAA (Anterior amygdalar area) MBA:23 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 175372863, an anterograde tracer injected into AAA of a wild-type mouse (44% of the injection in AAA) labelled axons in IA (projection density 0.147).

Allen Mouse Brain Connectivity Atlas, experiment 175372863

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to AAA (Anterior amygdalar area) MBA:23 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 573639461, an anterograde tracer injected into CEA of a Foxp2-IRES-Cre mouse, the tracer Cre-dependent (27% of the injection in CEA) labelled axons in AAA (projection density 0.051).

Allen Mouse Brain Connectivity Atlas, experiment 573639461

Made by an adapter reading a database (allen-connectivity@1.3.0).

MEA (Medial amygdalar nucleus) MBA:403 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 180981417, an anterograde tracer injected into MEA of a wild-type mouse (49% of the injection in MEA) labelled axons in TMv (projection density 0.112).

Allen Mouse Brain Connectivity Atlas, experiment 180981417

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to SPA (Subparafascicular area) MBA:609 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 113935990, an anterograde tracer injected into BMA of a wild-type mouse (36% of the injection in BMA) labelled axons in SPA (projection density 0.030).

Allen Mouse Brain Connectivity Atlas, experiment 113935990

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to BA (Bed nucleus of the accessory olfactory tract) MBA:292 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in BA (projection density 0.192).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

Made by an adapter reading a database (allen-connectivity@1.3.0).

PT (Parataenial nucleus) MBA:15 projects to BLA (Basolateral amygdalar nucleus) MBA:295 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 176897793, an anterograde tracer injected into PT of a Cart-Tg1-Cre mouse, the tracer Cre-dependent (66% of the injection in PT) labelled axons in BLA (projection density 0.022).

Allen Mouse Brain Connectivity Atlas, experiment 176897793

Made by an adapter reading a database (allen-connectivity@1.3.0).

BMA (Basomedial amygdalar nucleus) MBA:319 projects to TMv (Tuberomammillary nucleus, ventral part) MBA:1 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 115958115, an anterograde tracer injected into BMA of a wild-type mouse (38% of the injection in BMA) labelled axons in TMv (projection density 0.093).

Allen Mouse Brain Connectivity Atlas, experiment 115958115

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to PST (Preparasubthalamic nucleus) MBA:356 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 112459547, an anterograde tracer injected into CEA of a wild-type mouse (39% of the injection in CEA) labelled axons in PST (projection density 0.015).

Allen Mouse Brain Connectivity Atlas, experiment 112459547

Made by an adapter reading a database (allen-connectivity@1.3.0).

RE (Nucleus of reuniens) MBA:181 projects to IA (Intercalated amygdalar nucleus) MBA:1105 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 204832205, an anterograde tracer injected into RE of a Adcyap1-2A-Cre mouse, the tracer Cre-dependent (28% of the injection in RE) labelled axons in IA (projection density 0.016).

Allen Mouse Brain Connectivity Atlas, experiment 204832205

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COAp (Cortical amygdalar area, posterior part) MBA:647 projects to TT (Taenia tecta) MBA:589 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 129573239, an anterograde tracer injected into COAp of a wild-type mouse (52% of the injection in COAp) labelled axons in TT (projection density 0.024).

Allen Mouse Brain Connectivity Atlas, experiment 129573239

Made by an adapter reading a database (allen-connectivity@1.3.0).

ENTl (Entorhinal area, lateral part) MBA:918 projects to CEA (Central amygdalar nucleus) MBA:536 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 272414403, an anterograde tracer injected into ENTl of a wild-type mouse (71% of the injection in ENTl) labelled axons in CEA (projection density 0.039).

Allen Mouse Brain Connectivity Atlas, experiment 272414403

Made by an adapter reading a database (allen-connectivity@1.3.0).

CEA (Central amygdalar nucleus) MBA:536 projects to LH (Lateral habenula) MBA:186 · Mouse

In Allen Mouse Brain Connectivity Atlas experiment 304970618, an anterograde tracer injected into CEA of a Chrna2-Cre_OE25 mouse, the tracer Cre-dependent (39% of the injection in CEA) labelled axons in LH (projection density 0.021).

Allen Mouse Brain Connectivity Atlas, experiment 304970618

Made by an adapter reading a database (allen-connectivity@1.3.0).